PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 333aa    MW: 36309.3 Da    PI: 9.6017
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286456genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.73.3e-3451107358
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++ 
  MDP0000286456  51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHRRDQY 107
                    689******************************9********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-2852106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2354104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-3154105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.71754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.5E-27194263IPR009057Homeodomain-like
SuperFamilySSF466891.34E-16197264IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25203259IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNFTTVTATI QTPDTDTEPP SPSDPKSNFF SSRSLSFTNG AFQPQSTPTM VVAYKECLKN  60
HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHRRDQYRPK SNVIRNPHRL  120
LPAPKPAHYN HSSSPSPSSS PNPTLSPQSP PPVSHLPPSY FASPPQMLLA LSSGFSGPSD  180
EHPHQHQLNP TAVKKTEKYP GEKKRSRTRF SQEQKEKMLS FAEKVGWRLQ KSEERLVEDF  240
CSEVGIGRGV FKVWMHNNKH GRRRLERLGS GNGSLGDGGN MNKNVSEING DGERLGFDSM  300
NAHIASYNVN ANPLNEGSRA SFHLSTNGSS SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-202042601874ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260267GRRRLERL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232920.0bud| cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389477.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ13e-66ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ801e-136M5XJ80_PRUPE; Uncharacterized protein
STRINGscaffold_201819.13e-64(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-61zinc finger homeodomain 1